FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8208-RB through 18771 annotations produced 1 hits

methyl-CpG-binding-domain-like-protein (MBD-like):

Annotation Number : CG8208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027950
Gbrowse : chr3R:5385486-5387255 (+) // 100.0 //
Probeset : 1634898_a_at
Accessions : protein= NP_649907; /// NP_731370;, nucleotide= NM_141650; /// NM_169293;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from physical interaction /// 0005634 // nucleus // inferred from electronic annotation /
FlyMine data for FBgn0027950.
BioGrid reports that CG8208 interacts with CG7471 CG7471 CG7471 CG7471 .
TRiP has 2 RNAi stocks for FBgn0027950 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027950 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	188 ± 9	4 of 4	1.60	Up
Head	87 ± 4	4 of 4	0.80	Down
Eye	117 ± 6	4 of 4	1.02	None
Thoracicoabdominal ganglion	143 ± 3	4 of 4	1.20	Up
Salivary gland	81 ± 7	4 of 4	0.71	Down
Crop	57 ± 2	4 of 4	0.50	Down
Midgut	33 ± 1	4 of 4	0.30	Down
Tubule	27 ± 1	4 of 4	0.20	Down
Hindgut	44 ± 1	4 of 4	0.40	Down
Heart	54 ± 3	4 of 4	0.47	Down
Fat body	57 ± 4	4 of 4	0.49	Down
Ovary	218 ± 8	4 of 4	1.90	Up
Testis	212 ± 13	4 of 4	1.80	Up
Male accessory glands	102 ± 4	4 of 4	0.90	None
Virgin spermatheca	41 ± 2	4 of 4	0.36	Down
Mated spermatheca	41 ± 1	4 of 4	0.36	Down
Adult carcass	56 ± 3	4 of 4	0.50	Down
Larval CNS	328 ± 8	4 of 4	2.84	Up
Larval Salivary gland	107 ± 4	4 of 4	0.92	None
Larval midgut	36 ± 3	4 of 4	0.31	Down
Larval tubule	58 ± 4	4 of 4	0.50	Down
Larval hindgut	60 ± 3	4 of 4	0.52	Down
Larval fat body	110 ± 8	4 of 4	1.00	None
Larval trachea	132 ± 9	4 of 4	1.15	None
Larval carcass	67 ± 8	4 of 4	0.58	Down
S2 cells (growing)	129 ± 2	4 of 4	1.12	None
Whole fly	115 ± 8	4 of 4

Looking for CG8208-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720