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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8209-RA through 18771 annotations produced 1 hits



(CG8209):

Annotation Number : CG8209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035830
Gbrowse : chr3L:7969402-7970956 (+) // 100.0 //
Probeset : 1625389_at
Accessions : protein= NP_648167;, nucleotide= NM_139910;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0035830.
BDGP gene expression has embryonic in situ data for CG8209: 11 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0035830 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035830 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 ± 54 of 4 0.70Down
Head158 ± 34 of 4 0.80None
Eye102 ± 24 of 4 0.54Down
Thoracicoabdominal ganglion137 ± 64 of 4 0.70Down
Salivary gland183 ± 184 of 4 0.96None
Crop237 ± 34 of 4 1.20Up
Midgut105 ± 104 of 4 0.50Down
Tubule92 ± 34 of 4 0.50Down
Hindgut200 ± 64 of 4 1.00None
Heart216 ± 84 of 4 1.13None
Fat body270 ± 224 of 4 1.41Up
Ovary253 ± 44 of 4 1.30Up
Testis249 ± 144 of 4 1.30Up
Male accessory glands346 ± 64 of 4 1.80Up
Virgin spermatheca61 ± 54 of 4 0.32Down
Mated spermatheca63 ± 24 of 4 0.33Down
Adult carcass274 ± 184 of 4 1.40Up
Larval CNS382 ± 144 of 4 2.00Up
Larval Salivary gland345 ± 134 of 4 1.81Up
Larval midgut191 ± 194 of 4 1.00None
Larval tubule336 ± 44 of 4 1.80Up
Larval hindgut272 ± 94 of 4 1.43Up
Larval fat body218 ± 164 of 4 1.10None
Larval trachea301 ± 324 of 4 1.57Up
Larval carcass274 ± 194 of 4 1.44Up
S2 cells (growing)577 ± 84 of 4 3.02Up
Whole fly191 ± 144 of 4

Looking for CG8209-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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