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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8216-RA through 18771 annotations produced 1 hits



(CG8216):

Annotation Number : CG8216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033358
Gbrowse : chr2R:4850668-4855687 (-) // 100.0 //
Probeset : 1640058_at
Accessions : protein= NP_610434;, nucleotide= NM_136590;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0033358.
TRiP has 1 RNAi stocks for FBgn0033358 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033358 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain954 284 of 432.50Up
Head310 84 of 410.60Up
Eye22 24 of 4 0.77None
Thoracicoabdominal ganglion608 164 of 420.70Up
Salivary gland8 20 of 4 0.28Down
Crop9 13 of 4 0.30Down
Midgut3 10 of 4 0.10Down
Tubule4 10 of 4 0.10Down
Hindgut6 11 of 4 0.20Down
Heart10 11 of 4 0.35Down
Fat body9 43 of 4 0.33Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.07Down
Mated spermatheca1 00 of 4 0.07Down
Adult carcass23 24 of 4 0.80None
Larval CNS250 464 of 4 8.54Up
Larval Salivary gland3 00 of 4 0.12Down
Larval midgut4 10 of 4 0.14Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut3 10 of 4 0.12Down
Larval fat body3 10 of 4 0.10Down
Larval trachea7 10 of 4 0.26Down
Larval carcass12 23 of 4 0.42Down
S2 cells (growing)2 10 of 4 0.07Down
Whole fly29 24 of 4

Looking for CG8216-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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