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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8221-RA through 18771 annotations produced 1 hits



chr2R:12538596-12540204 (-) // 100.0 // (amyrel):

Annotation Number : CG8221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623601_at
Accessions : protein= , nucleotide= NP_477262;
Pathway : 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inf
Interpro : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head8 ± 23 of 4 0.70None
Eye2 ± 10 of 4 0.19Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.40Down
Salivary gland6 ± 20 of 4 0.52None
Crop8 ± 12 of 4 0.70None
Midgut183 ± 384 of 414.70Up
Tubule12 ± 22 of 4 1.00None
Hindgut9 ± 13 of 4 0.80None
Heart2 ± 10 of 4 0.20Down
Fat body6 ± 40 of 4 0.53None
Ovary3 ± 11 of 4 0.20Down
Testis5 ± 02 of 4 0.50Down
Male accessory glands13 ± 20 of 4 1.10None
Virgin spermatheca4 ± 10 of 4 0.34Down
Mated spermatheca2 ± 10 of 4 0.22Down
Adult carcass12 ± 20 of 4 1.00None
Larval CNS2 ± 11 of 4 0.23Down
Larval Salivary gland7 ± 10 of 4 0.59None
Larval midgut190 ± 674 of 415.26None
Larval tubule17 ± 24 of 4 1.40None
Larval hindgut8 ± 03 of 4 0.70None
Larval fat body14 ± 10 of 4 1.20None
Larval trachea1 ± 10 of 4 0.10Down
Larval carcass3 ± 00 of 4 0.27Down
S2 cells (growing)5 ± 00 of 4 0.41Down
Whole fly12 ± 13 of 4

Looking for CG8221-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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