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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8222-RA through 18771 annotations produced 1 hits



VEGF receptor (Pvr):

Annotation Number : CG8222
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032006
Gbrowse : chr2L:8221118-8239859 (-) // 100.0 //
Probeset : 1638143_a_at
Accessions : protein= NP_001162909; /// NP_001162910; /// NP_001162911; /// NP_523509; /// NP_723365; /// NP_787997; /// NP_995647; /// NP_995648; /// NP_995649;, nucleotide= NM_001169438; /// NM_001169439; /// NM_001169440; /// NM_078785; /// NM_164801; /// NM_175983; /// NM_205925; /// NM_205926; /// NM_205927;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0032006.
Homophila reports that CG8222 is a close match (2e-17) to human gene CRAF;NS5;RAF1 (NP_002871), a gene associated with LEOPARD syndrome 2, 611554 (3);Noonan syndrome 5, 611553 (3).
BioGrid reports that CG8222 interacts with CG10079 CG10079 CG10491 CG10491 CG10379 CG7103 CG7103 CG7103 .
TRiP has 1 RNAi stocks for FBgn0032006 available for purchase.
VDRC has 6 RNAi stocks for FBgn0032006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 14 of 4 0.80Down
Head137 64 of 4 1.80Up
Eye163 14 of 4 2.12Up
Thoracicoabdominal ganglion100 34 of 4 1.30Up
Salivary gland881 264 of 411.44Up
Crop280 104 of 4 3.60Up
Midgut201 54 of 4 2.60Up
Tubule277 234 of 4 3.60Up
Hindgut211 74 of 4 2.70Up
Heart319 164 of 4 4.15Up
Fat body76 74 of 4 0.99None
Ovary32 14 of 4 0.40Down
Testis67 44 of 4 0.90None
Male accessory glands197 64 of 4 2.60Up
Virgin spermatheca76 84 of 4 0.99None
Mated spermatheca85 44 of 4 1.11None
Adult carcass140 94 of 4 1.80Up
Larval CNS33 54 of 4 0.43Down
Larval Salivary gland267 244 of 4 3.47Up
Larval midgut157 24 of 4 2.05Up
Larval tubule92 44 of 4 1.20Up
Larval hindgut206 64 of 4 2.67Up
Larval fat body385 164 of 4 5.00Up
Larval trachea191 84 of 4 2.49Up
Larval carcass165 64 of 4 2.15Up
S2 cells (growing)1524 394 of 419.79Up
Whole fly77 24 of 4

Looking for CG8222-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime