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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8230-RA through 18771 annotations produced 1 hits



(CG8230):

Annotation Number : CG8230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027607
Gbrowse : chr2R:4831800-4834866 (-) // 100.0 //
Probeset : 1625814_at
Accessions : protein= NP_610431;, nucleotide= NM_136587;
FlyMine data for FBgn0027607.
Homophila reports that CG8230 is a close match (2e-127) to human gene DMC;DYM;FLJ90130;SMC (NP_060123), a gene associated with Dyggve-Melchior-Clausen disease, 223800 (3);Smith-McCort dysplasia, 607326 (3).
BioGrid reports that CG8230 interacts with CG9244 CG9986 .
VDRC has 2 RNAi stocks for FBgn0027607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 34 of 4 1.00None
Head209 74 of 4 1.10None
Eye175 24 of 4 0.93None
Thoracicoabdominal ganglion198 54 of 4 1.10None
Salivary gland945 184 of 4 5.01Up
Crop326 134 of 4 1.70Up
Midgut225 44 of 4 1.20Up
Tubule417 204 of 4 2.20Up
Hindgut300 104 of 4 1.60Up
Heart184 94 of 4 0.98None
Fat body250 204 of 4 1.33Up
Ovary188 14 of 4 1.00None
Testis198 104 of 4 1.10None
Male accessory glands1082 324 of 4 5.70Up
Virgin spermatheca300 74 of 4 1.59Up
Mated spermatheca307 134 of 4 1.63Up
Adult carcass212 104 of 4 1.10None
Larval CNS169 104 of 4 0.90None
Larval Salivary gland1050 254 of 4 5.57Up
Larval midgut306 84 of 4 1.62Up
Larval tubule311 54 of 4 1.70Up
Larval hindgut346 194 of 4 1.84Up
Larval fat body178 214 of 4 0.90None
Larval trachea262 254 of 4 1.39Up
Larval carcass241 174 of 4 1.28Up
S2 cells (growing)439 114 of 4 2.33Up
Whole fly188 94 of 4

Looking for CG8230-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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