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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8245-RA through 18771 annotations produced 1 hits



(CG8245):

Annotation Number : CG8245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033031
Gbrowse : chr2R:1555897-1557491 (+) // 100.0 //
Probeset : 1633201_at
Accessions : protein= NP_610178;, nucleotide= NM_136334;
FlyMine data for FBgn0033031.
BDGP gene expression has embryonic in situ data for CG8245: 7 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0033031 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1155 ± 84 of 4 8.60Up
Head415 ± 174 of 4 3.10Up
Eye318 ± 94 of 4 2.38Up
Thoracicoabdominal ganglion1581 ± 554 of 411.80Up
Salivary gland17 ± 41 of 4 0.13Down
Crop6 ± 11 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut7 ± 03 of 4 0.10Down
Heart6 ± 03 of 4 0.05Down
Fat body9 ± 14 of 4 0.07Down
Ovary7 ± 04 of 4 0.10Down
Testis1035 ± 464 of 4 7.70Up
Male accessory glands9 ± 21 of 4 0.10Down
Virgin spermatheca4 ± 01 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass38 ± 14 of 4 0.30Down
Larval CNS482 ± 264 of 4 3.61Up
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut6 ± 10 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut4 ± 12 of 4 0.03Down
Larval fat body96 ± 474 of 4 0.70None
Larval trachea12 ± 74 of 4 0.09Down
Larval carcass12 ± 04 of 4 0.09Down
S2 cells (growing)3 ± 01 of 4 0.02Down
Whole fly133 ± 34 of 4

Looking for CG8245-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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