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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8256-RC through 18771 annotations produced 1 hits



mitochondrial GPD (Gpo-1):

Annotation Number : CG8256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022160
Gbrowse : chr2R:11745255-11750251 (-) // 100.0 //
Probeset : 1631474_s_at
Accessions : protein= NP_001097332; /// NP_611063; /// NP_725495; /// NP_725496;, nucleotide= NM_001103862; /// NM_137219; /// NM_166118; /// NM_166119;
Pathway : 0005739 // mitochondrion // inferred by curator /// 0005739 // mitochondrion // inferred from sequence or structural sim
Interpro : 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from mutant phenotype /// 0004368 // glycerol-3-phosp
FlyMine data for FBgn0022160.
BDGP gene expression has embryonic in situ data for l(2)k05713: 13 pix of staining in 8 body parts.
Homophila reports that CG8256 is a close match (0) to human gene GPD2 (NP_001076581), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0022160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain347 ± 94 of 4 1.00None
Head399 ± 324 of 4 1.10None
Eye181 ± 154 of 4 0.52Down
Thoracicoabdominal ganglion296 ± 104 of 4 0.80None
Salivary gland931 ± 814 of 4 2.66Up
Crop235 ± 84 of 4 0.70Down
Midgut185 ± 64 of 4 0.50Down
Tubule1277 ± 3084 of 4 3.60Up
Hindgut435 ± 134 of 4 1.20Up
Heart823 ± 894 of 4 2.35Up
Fat body1883 ± 1574 of 4 5.38Up
Ovary31 ± 04 of 4 0.10Down
Testis21 ± 04 of 4 0.10Down
Male accessory glands109 ± 34 of 4 0.30Down
Virgin spermatheca1130 ± 144 of 4 3.23Up
Mated spermatheca1614 ± 1114 of 4 4.61Up
Adult carcass1491 ± 1024 of 4 4.30Up
Larval CNS79 ± 64 of 4 0.23Down
Larval Salivary gland160 ± 224 of 4 0.46Down
Larval midgut252 ± 264 of 4 0.72Down
Larval tubule228 ± 184 of 4 0.70Down
Larval hindgut155 ± 144 of 4 0.44Down
Larval fat body61 ± 164 of 4 0.20Down
Larval trachea66 ± 64 of 4 0.19Down
Larval carcass324 ± 254 of 4 0.93None
S2 cells (growing)502 ± 274 of 4 1.44Up
Whole fly350 ± 224 of 4

Looking for CG8256-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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