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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8258-RA through 18771 annotations produced 1 hits



(CG8258):

Annotation Number : CG8258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033342
Gbrowse : chr2R:4792346-4794506 (-) // 100.0 //
Probeset : 1634700_at
Accessions : protein= NP_610418;, nucleotide= NM_136574;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // inferred f
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0033342.
BDGP gene expression has embryonic in situ data for CG8258: 17 pix of staining in 19 body parts.
Homophila reports that CG8258 is a close match (1e-49) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
VDRC has 3 RNAi stocks for FBgn0033342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 ± 74 of 4 0.30Down
Head347 ± 164 of 4 0.30Down
Eye236 ± 154 of 4 0.22Down
Thoracicoabdominal ganglion401 ± 124 of 4 0.40Down
Salivary gland375 ± 114 of 4 0.35Down
Crop615 ± 224 of 4 0.60Down
Midgut611 ± 264 of 4 0.60Down
Tubule542 ± 444 of 4 0.50Down
Hindgut536 ± 94 of 4 0.50Down
Heart281 ± 74 of 4 0.27Down
Fat body339 ± 334 of 4 0.32Down
Ovary1532 ± 94 of 4 1.40Up
Testis422 ± 84 of 4 0.40Down
Male accessory glands661 ± 294 of 4 0.60Down
Virgin spermatheca279 ± 174 of 4 0.26Down
Mated spermatheca371 ± 154 of 4 0.35Down
Adult carcass337 ± 154 of 4 0.30Down
Larval CNS1166 ± 414 of 4 1.10Up
Larval Salivary gland1100 ± 204 of 4 1.04None
Larval midgut560 ± 294 of 4 0.53Down
Larval tubule346 ± 134 of 4 0.30Down
Larval hindgut998 ± 644 of 4 0.94None
Larval fat body293 ± 224 of 4 0.30Down
Larval trachea1077 ± 1724 of 4 1.01None
Larval carcass949 ± 774 of 4 0.89None
S2 cells (growing)1352 ± 344 of 4 1.27Up
Whole fly1061 ± 234 of 4

Looking for CG8258-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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