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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8264-RA through 18771 annotations produced 1 hits



Ski-interacting protein (Bx42):

Annotation Number : CG8264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004856
Gbrowse : chrX:8998350-9000635 (-) // 100.0 //
Probeset : 1637100_at
Accessions : protein= NP_511093;, nucleotide= NM_078538;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from electronic annotation /// 0001700 // embryonic development via the syncytial blastoder
FlyMine data for FBgn0004856.
BDGP gene expression has embryonic in situ data for Bx42: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0004856 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 64 of 4 1.20Up
Head124 74 of 4 0.80Down
Eye188 34 of 4 1.17Up
Thoracicoabdominal ganglion166 54 of 4 1.00None
Salivary gland218 104 of 4 1.35Up
Crop143 34 of 4 0.90Down
Midgut157 54 of 4 1.00None
Tubule183 54 of 4 1.10Up
Hindgut144 74 of 4 0.90None
Heart101 64 of 4 0.63Down
Fat body131 64 of 4 0.81Down
Ovary263 24 of 4 1.60Up
Testis54 24 of 4 0.30Down
Male accessory glands177 34 of 4 1.10None
Virgin spermatheca200 64 of 4 1.24Up
Mated spermatheca192 64 of 4 1.19Up
Adult carcass124 24 of 4 0.80Down
Larval CNS270 94 of 4 1.67Up
Larval Salivary gland209 24 of 4 1.30Up
Larval midgut113 24 of 4 0.70Down
Larval tubule129 34 of 4 0.80Down
Larval hindgut120 34 of 4 0.75Down
Larval fat body116 84 of 4 0.70Down
Larval trachea202 104 of 4 1.25Up
Larval carcass111 84 of 4 0.69Down
S2 cells (growing)228 84 of 4 1.41Up
Whole fly162 54 of 4

Looking for CG8264-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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