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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8268-RA through 18771 annotations produced 1 hits



chr3L:7929474-7930358 (+) // 100.0 // (Srp9):

Annotation Number : CG8268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631648_at
Accessions : protein= , nucleotide= NP_648163;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0005786 // signal recognition particle
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 ± 34 of 4 1.10None
Head217 ± 44 of 4 0.90None
Eye224 ± 54 of 4 0.94None
Thoracicoabdominal ganglion286 ± 114 of 4 1.20None
Salivary gland595 ± 184 of 4 2.49Up
Crop195 ± 74 of 4 0.80None
Midgut186 ± 54 of 4 0.80None
Tubule193 ± 134 of 4 0.80Down
Hindgut170 ± 34 of 4 0.70Down
Heart199 ± 84 of 4 0.84None
Fat body263 ± 464 of 4 1.10None
Ovary402 ± 114 of 4 1.70Up
Testis110 ± 44 of 4 0.50Down
Male accessory glands380 ± 294 of 4 1.60Up
Virgin spermatheca226 ± 84 of 4 0.95None
Mated spermatheca323 ± 314 of 4 1.35None
Adult carcass175 ± 24 of 4 0.70Down
Larval CNS266 ± 104 of 4 1.11None
Larval Salivary gland655 ± 124 of 4 2.74Up
Larval midgut148 ± 94 of 4 0.62Down
Larval tubule214 ± 44 of 4 0.90None
Larval hindgut213 ± 234 of 4 0.89None
Larval fat body236 ± 224 of 4 1.00None
Larval trachea319 ± 394 of 4 1.34Up
Larval carcass252 ± 114 of 4 1.06None
S2 cells (growing)351 ± 34 of 4 1.47Up
Whole fly238 ± 194 of 4

Looking for CG8268-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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