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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8284-RA through 18771 annotations produced 1 hits



Ubiquitin conjugating enzyme 4 (UbcD4):

Annotation Number : CG8284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015321
Gbrowse : chr3L:9691441-9693581 (+) // 100.0 //
Probeset : 1628595_at
Accessions : protein= NP_524010;, nucleotide= NM_079286;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0015321.
BDGP gene expression has embryonic in situ data for UbcD4: 4 pix of staining in 1 body parts.
Homophila reports that CG8284 is a close match (2e-13) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
TRiP has 1 RNAi stocks for FBgn0015321 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 64 of 4 0.80Down
Head138 24 of 4 0.60Down
Eye132 114 of 4 0.57Down
Thoracicoabdominal ganglion151 84 of 4 0.70Down
Salivary gland245 94 of 4 1.06None
Crop129 54 of 4 0.60Down
Midgut123 74 of 4 0.50Down
Tubule191 94 of 4 0.80Down
Hindgut119 34 of 4 0.50Down
Heart138 44 of 4 0.60Down
Fat body229 124 of 4 0.99None
Ovary500 94 of 4 2.20Up
Testis96 44 of 4 0.40Down
Male accessory glands201 104 of 4 0.90None
Virgin spermatheca309 114 of 4 1.33Up
Mated spermatheca348 114 of 4 1.50Up
Adult carcass122 64 of 4 0.50Down
Larval CNS334 404 of 4 1.44Up
Larval Salivary gland167 94 of 4 0.72Down
Larval midgut146 14 of 4 0.63Down
Larval tubule230 104 of 4 1.00None
Larval hindgut159 04 of 4 0.69Down
Larval fat body208 174 of 4 0.90None
Larval trachea146 154 of 4 0.63Down
Larval carcass175 54 of 4 0.76Down
S2 cells (growing)238 24 of 4 1.03None
Whole fly232 24 of 4

Looking for CG8284-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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