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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8286-RA through 18771 annotations produced 1 hits



CG8286 (P58IPK):

Annotation Number : CG8286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037718
Gbrowse : chr3R:5412660-5415302 (+) // 100.0 //
Probeset : 1641563_at
Accessions : protein= NP_649916;, nucleotide= NM_141659;
Interpro : 0004860 // protein kinase inhibitor activity // inferred from sequence or structural similarity /// 0005488 // binding /
FlyMine data for FBgn0037718.
BDGP gene expression has embryonic in situ data for CG8286: 16 pix of staining in 15 body parts.
VDRC has 2 RNAi stocks for FBgn0037718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 ± 24 of 4 0.60Down
Head241 ± 194 of 4 0.90None
Eye152 ± 104 of 4 0.57Down
Thoracicoabdominal ganglion222 ± 74 of 4 0.80Down
Salivary gland941 ± 414 of 4 3.50Up
Crop208 ± 74 of 4 0.80Down
Midgut457 ± 204 of 4 1.70Up
Tubule374 ± 774 of 4 1.40None
Hindgut160 ± 34 of 4 0.60Down
Heart595 ± 404 of 4 2.21Up
Fat body681 ± 594 of 4 2.53Up
Ovary336 ± 84 of 4 1.20Up
Testis193 ± 104 of 4 0.70Down
Male accessory glands1960 ± 1234 of 4 7.30Up
Virgin spermatheca672 ± 304 of 4 2.50Up
Mated spermatheca746 ± 734 of 4 2.77Up
Adult carcass431 ± 164 of 4 1.60Up
Larval CNS221 ± 134 of 4 0.82Down
Larval Salivary gland1284 ± 434 of 4 4.77Up
Larval midgut488 ± 344 of 4 1.81Up
Larval tubule438 ± 274 of 4 1.60Up
Larval hindgut280 ± 324 of 4 1.04None
Larval fat body333 ± 824 of 4 1.20None
Larval trachea250 ± 634 of 4 0.93None
Larval carcass295 ± 334 of 4 1.10None
S2 cells (growing)754 ± 154 of 4 2.80Up
Whole fly269 ± 34 of 4

Looking for CG8286-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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