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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8309-RA through 18771 annotations produced 1 hits



Transport and Golgi organization 7 (Tango7):

Annotation Number : CG8309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033902
Gbrowse : chr2R:10050570-10052374 (-) // 100.0 //
Probeset : 1629578_at
Accessions : protein= NP_610932;, nucleotide= NM_137088;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003824 // catalytic activi
FlyMine data for FBgn0033902.
BDGP gene expression has embryonic in situ data for CG8309: 4 pix of staining in 3 body parts.
BioGrid reports that CG8309 interacts with CG8335 CG9769 .
TRiP has 1 RNAi stocks for FBgn0033902 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033902 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1168 ± 314 of 4 1.30Up
Head1123 ± 494 of 4 1.30Up
Eye2120 ± 444 of 4 2.39Up
Thoracicoabdominal ganglion1503 ± 374 of 4 1.70Up
Salivary gland1586 ± 674 of 4 1.79Up
Crop1339 ± 194 of 4 1.50Up
Midgut851 ± 164 of 4 1.00None
Tubule1027 ± 154 of 4 1.20Up
Hindgut1383 ± 244 of 4 1.60Up
Heart1430 ± 1004 of 4 1.61Up
Fat body1304 ± 2134 of 4 1.47Up
Ovary903 ± 104 of 4 1.00None
Testis361 ± 44 of 4 0.40Down
Male accessory glands2272 ± 1604 of 4 2.60Up
Virgin spermatheca2017 ± 374 of 4 2.28Up
Mated spermatheca1986 ± 554 of 4 2.24Up
Adult carcass964 ± 504 of 4 1.10None
Larval CNS885 ± 494 of 4 1.00None
Larval Salivary gland1355 ± 364 of 4 1.53Up
Larval midgut628 ± 174 of 4 0.71Down
Larval tubule1188 ± 464 of 4 1.30Up
Larval hindgut1154 ± 274 of 4 1.30Up
Larval fat body1234 ± 934 of 4 1.40Up
Larval trachea1739 ± 724 of 4 1.96Up
Larval carcass1103 ± 224 of 4 1.24Up
S2 cells (growing)2035 ± 384 of 4 2.30Up
Whole fly886 ± 184 of 4

Looking for CG8309-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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