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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8310-RA through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase subunit 36-3 (Vha36-3):

Annotation Number : CG8310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040377
Gbrowse : chrX:2473315-2474247 (-) // 100.0 //
Probeset : 1635610_at
Accessions : protein= NP_570008;, nucleotide= NM_130652;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // non-traceable author statement /// 0033178 // proton-transporting two-sector ATPase complex
FlyMine data for FBgn0040377.
VDRC has 1 RNAi stocks for FBgn0040377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.20Down
Head53 ± 24 of 4 1.50Up
Eye64 ± 54 of 4 1.79Up
Thoracicoabdominal ganglion8 ± 12 of 4 0.20Down
Salivary gland20 ± 30 of 4 0.57Down
Crop24 ± 04 of 4 0.70Down
Midgut6 ± 10 of 4 0.20Down
Tubule10 ± 12 of 4 0.30Down
Hindgut50 ± 44 of 4 1.40Up
Heart8 ± 02 of 4 0.23Down
Fat body11 ± 10 of 4 0.32Down
Ovary1 ± 00 of 4 0.00Down
Testis30 ± 04 of 4 0.80Down
Male accessory glands48 ± 34 of 4 1.30Up
Virgin spermatheca7 ± 00 of 4 0.21Down
Mated spermatheca9 ± 21 of 4 0.26Down
Adult carcass127 ± 94 of 4 3.50Up
Larval CNS52 ± 154 of 4 1.45None
Larval Salivary gland7 ± 20 of 4 0.21Down
Larval midgut7 ± 10 of 4 0.22Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut30 ± 14 of 4 0.83None
Larval fat body10 ± 10 of 4 0.30Down
Larval trachea64 ± 214 of 4 1.79None
Larval carcass201 ± 114 of 4 5.57Up
S2 cells (growing)5 ± 00 of 4 0.16Down
Whole fly36 ± 14 of 4

Looking for CG8310-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime