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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8312-RA through 18771 annotations produced 1 hits



(CG8312):

Annotation Number : CG8312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037720
Gbrowse : chr3R:5417032-5450798 (+) // 100.0 //
Probeset : 1632839_a_at
Accessions : protein= NP_649918; /// NP_788615;, nucleotide= NM_141661; /// NM_176438;
FlyMine data for FBgn0037720.
BDGP gene expression has embryonic in situ data for CG8312: 43 pix of staining in 16 body parts.
VDRC has 1 RNAi stocks for FBgn0037720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 ± 14 of 4 0.60Down
Head295 ± 164 of 4 1.60Up
Eye206 ± 104 of 4 1.12None
Thoracicoabdominal ganglion190 ± 44 of 4 1.00None
Salivary gland1503 ± 914 of 4 8.14Up
Crop329 ± 114 of 4 1.80Up
Midgut230 ± 94 of 4 1.20Up
Tubule702 ± 294 of 4 3.80Up
Hindgut343 ± 124 of 4 1.90Up
Heart51 ± 14 of 4 0.28Down
Fat body47 ± 54 of 4 0.26Down
Ovary221 ± 34 of 4 1.20Up
Testis311 ± 104 of 4 1.70Up
Male accessory glands126 ± 34 of 4 0.70Down
Virgin spermatheca197 ± 154 of 4 1.07None
Mated spermatheca216 ± 414 of 4 1.17None
Adult carcass261 ± 54 of 4 1.40Up
Larval CNS67 ± 44 of 4 0.37Down
Larval Salivary gland57 ± 34 of 4 0.31Down
Larval midgut385 ± 174 of 4 2.09Up
Larval tubule143 ± 94 of 4 0.80Down
Larval hindgut408 ± 154 of 4 2.21Up
Larval fat body52 ± 124 of 4 0.30Down
Larval trachea792 ± 624 of 4 4.29Up
Larval carcass289 ± 104 of 4 1.57Up
S2 cells (growing)86 ± 34 of 4 0.47Down
Whole fly184 ± 114 of 4

Looking for CG8312-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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