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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8318-RB through 18771 annotations produced 2 hits



neurofibromatosis type 1 (Nf1):

Annotation Number : CG8318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015269
Gbrowse : chr3R:21808734-21819713 (+) // 100.0 //
Probeset : 1628651_a_at
Accessions : protein= NP_001014668; /// NP_733131; /// NP_733132;, nucleotide= NM_001014668; /// NM_170252; /// NM_170253;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity
FlyMine data for FBgn0015269.
Homophila reports that CG8318 is a close match (4e-26) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG8318 interacts with CG32498 CG10952 CG9375 CG12559 CG14472 CG15444 .
TRiP has 2 RNAi stocks for FBgn0015269 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 ± 34 of 4 6.40Up
Head39 ± 64 of 4 1.40None
Eye16 ± 31 of 4 0.57None
Thoracicoabdominal ganglion86 ± 84 of 4 3.10Up
Salivary gland16 ± 40 of 4 0.57None
Crop36 ± 42 of 4 1.30None
Midgut28 ± 20 of 4 1.00None
Tubule12 ± 10 of 4 0.40Down
Hindgut20 ± 20 of 4 0.70None
Heart15 ± 11 of 4 0.55None
Fat body14 ± 20 of 4 0.49Down
Ovary26 ± 24 of 4 0.90None
Testis38 ± 24 of 4 1.30None
Male accessory glands17 ± 20 of 4 0.60None
Virgin spermatheca6 ± 20 of 4 0.22Down
Mated spermatheca16 ± 20 of 4 0.58None
Adult carcass27 ± 70 of 4 1.00None
Larval CNS138 ± 84 of 4 4.88Up
Larval Salivary gland15 ± 20 of 4 0.56None
Larval midgut11 ± 10 of 4 0.42Down
Larval tubule18 ± 22 of 4 0.70None
Larval hindgut9 ± 10 of 4 0.35Down
Larval fat body22 ± 31 of 4 0.80None
Larval trachea14 ± 52 of 4 0.51Down
Larval carcass17 ± 42 of 4 0.60None
S2 cells (growing)111 ± 64 of 4 3.93Up
Whole fly28 ± 40 of 4



neurofibromatosis type 1 (Nf1):

Annotation Number : CG8318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015269
Gbrowse : chr3R:21808734-21819713 (+) // 100.0 //
Probeset : 1634083_at
Accessions : protein= NP_001014668; /// NP_733131; /// NP_733132;, nucleotide= NM_001014668; /// NM_170252; /// NM_170253;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity
FlyMine data for FBgn0015269.
Homophila reports that CG8318 is a close match (4e-26) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG8318 interacts with CG32498 CG10952 CG9375 CG12559 CG14472 CG15444 .
TRiP has 2 RNAi stocks for FBgn0015269 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain342 ± 104 of 417.20Up
Head64 ± 54 of 4 3.20Up
Eye20 ± 24 of 4 1.05None
Thoracicoabdominal ganglion153 ± 84 of 4 7.70Up
Salivary gland16 ± 33 of 4 0.82None
Crop33 ± 34 of 4 1.70Up
Midgut8 ± 02 of 4 0.40Down
Tubule11 ± 02 of 4 0.60Down
Hindgut20 ± 14 of 4 1.00None
Heart10 ± 12 of 4 0.53Down
Fat body24 ± 74 of 4 1.21None
Ovary17 ± 14 of 4 0.90None
Testis5 ± 03 of 4 0.20Down
Male accessory glands13 ± 04 of 4 0.70Down
Virgin spermatheca23 ± 24 of 4 1.16None
Mated spermatheca28 ± 83 of 4 1.42None
Adult carcass10 ± 21 of 4 0.50Down
Larval CNS371 ± 554 of 418.68Up
Larval Salivary gland16 ± 14 of 4 0.85None
Larval midgut6 ± 10 of 4 0.30Down
Larval tubule14 ± 14 of 4 0.70None
Larval hindgut15 ± 34 of 4 0.77None
Larval fat body18 ± 23 of 4 0.90None
Larval trachea33 ± 74 of 4 1.68Up
Larval carcass13 ± 14 of 4 0.67Down
S2 cells (growing)131 ± 84 of 4 6.61Up
Whole fly19 ± 14 of 4

Looking for CG8318-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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