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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8335-RA through 18771 annotations produced 1 hits



(CG8335):

Annotation Number : CG8335
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033069
Gbrowse : chr2R:2088299-2089338 (+) // 100.0 //
Probeset : 1624239_at
Accessions : protein= NP_610210;, nucleotide= NM_136366;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 co
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0033069.
VDRC has 3 RNAi stocks for FBgn0033069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20Down
Head6 11 of 4 0.20Down
Eye5 11 of 4 0.19Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland15 41 of 4 0.53None
Crop8 12 of 4 0.30Down
Midgut14 03 of 4 0.50Down
Tubule8 10 of 4 0.30Down
Hindgut9 12 of 4 0.30Down
Heart5 00 of 4 0.18Down
Fat body7 32 of 4 0.24Down
Ovary6 01 of 4 0.20Down
Testis283 54 of 4 9.40Up
Male accessory glands10 22 of 4 0.30Down
Virgin spermatheca9 12 of 4 0.32Down
Mated spermatheca7 11 of 4 0.25Down
Adult carcass14 12 of 4 0.50Down
Larval CNS5 22 of 4 0.19Down
Larval Salivary gland8 11 of 4 0.27Down
Larval midgut5 20 of 4 0.18Down
Larval tubule7 11 of 4 0.20Down
Larval hindgut8 04 of 4 0.27Down
Larval fat body71 234 of 4 2.40None
Larval trachea6 32 of 4 0.22Down
Larval carcass7 10 of 4 0.23Down
S2 cells (growing)6 11 of 4 0.22Down
Whole fly30 14 of 4

Looking for CG8335-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime