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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8338-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S16 (mRpS16):

Annotation Number : CG8338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033907
Gbrowse : chr2R:10060484-10061041 (-) // 100.0 //
Probeset : 1626433_at
Accessions : protein= NP_523737;, nucleotide= NM_079013;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0033907.
Homophila reports that CG8338 is a close match (2e-24) to human gene MRPS16;COXPD2 (NP_057149), a gene associated with Combined oxidative phosphorylation deficiency 2, 610498 (3).
VDRC has 3 RNAi stocks for FBgn0033907 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain241 44 of 4 0.90None
Head205 14 of 4 0.80None
Eye293 164 of 4 1.14None
Thoracicoabdominal ganglion280 154 of 4 1.10None
Salivary gland163 104 of 4 0.64Down
Crop271 114 of 4 1.10None
Midgut160 104 of 4 0.60Down
Tubule152 24 of 4 0.60Down
Hindgut265 94 of 4 1.00None
Heart186 84 of 4 0.73Down
Fat body217 144 of 4 0.85None
Ovary420 54 of 4 1.60Up
Testis175 24 of 4 0.70Down
Male accessory glands366 194 of 4 1.40Up
Virgin spermatheca102 74 of 4 0.40Down
Mated spermatheca128 84 of 4 0.50Down
Adult carcass239 64 of 4 0.90None
Larval CNS316 144 of 4 1.23Up
Larval Salivary gland306 224 of 4 1.19None
Larval midgut101 54 of 4 0.39Down
Larval tubule137 24 of 4 0.50Down
Larval hindgut249 224 of 4 0.97None
Larval fat body142 74 of 4 0.60Down
Larval trachea269 274 of 4 1.05None
Larval carcass176 194 of 4 0.69Down
S2 cells (growing)306 104 of 4 1.20Up
Whole fly256 164 of 4

Looking for CG8338-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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