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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8344-RA through 18771 annotations produced 1 hits



RNA polymerase III (RpIII128):

Annotation Number : CG8344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004463
Gbrowse : chr2R:7926594-7930138 (+) // 100.0 //
Probeset : 1628131_at
Accessions : protein= NP_523706;, nucleotide= NM_078982;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0004463.
VDRC has 1 RNAi stocks for FBgn0004463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 14 of 4 0.90None
Head40 24 of 4 0.70Down
Eye45 24 of 4 0.79None
Thoracicoabdominal ganglion43 14 of 4 0.80Down
Salivary gland59 54 of 4 1.04None
Crop59 54 of 4 1.00None
Midgut49 24 of 4 0.90None
Tubule60 54 of 4 1.10None
Hindgut49 24 of 4 0.90None
Heart40 34 of 4 0.71Down
Fat body54 54 of 4 0.96None
Ovary92 24 of 4 1.60Up
Testis21 04 of 4 0.40Down
Male accessory glands91 24 of 4 1.60Up
Virgin spermatheca75 54 of 4 1.32Up
Mated spermatheca90 74 of 4 1.58Up
Adult carcass37 24 of 4 0.70Down
Larval CNS119 204 of 4 2.10Up
Larval Salivary gland99 44 of 4 1.75Up
Larval midgut44 44 of 4 0.78None
Larval tubule37 24 of 4 0.70Down
Larval hindgut66 24 of 4 1.16None
Larval fat body35 34 of 4 0.60Down
Larval trachea88 114 of 4 1.55Up
Larval carcass68 44 of 4 1.20None
S2 cells (growing)110 24 of 4 1.94Up
Whole fly57 44 of 4

Looking for CG8344-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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