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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8354-RA through 18771 annotations produced 1 hits

E(spl) region transcript m6 (m6):

Annotation Number : CG8354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002632
Gbrowse : chr3R:21858705-21858918 (+) // 100.0 //
Probeset : 1623734_at
Accessions : protein= NP_524512;, nucleotide= NM_079788;
FlyMine data for FBgn0002632.
VDRC has 2 RNAi stocks for FBgn0002632 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 2.30None
Head2 10 of 4 1.50None
Eye2 00 of 4 1.52None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland7 20 of 4 4.59None
Crop4 20 of 4 2.90None
Midgut4 10 of 4 2.90None
Tubule2 00 of 4 1.70None
Hindgut1 00 of 4 0.80None
Heart4 01 of 4 2.84Up
Fat body2 10 of 4 1.69None
Ovary1 10 of 4 1.10None
Testis1 00 of 4 1.10None
Male accessory glands4 30 of 4 2.80None
Virgin spermatheca2 00 of 4 1.82None
Mated spermatheca2 00 of 4 1.67None
Adult carcass4 20 of 4 3.00None
Larval CNS28 44 of 418.93Up
Larval Salivary gland1 00 of 4 0.79None
Larval midgut6 20 of 4 4.30None
Larval tubule1 00 of 4 0.80None
Larval hindgut1 00 of 4 1.00None
Larval fat body3 10 of 4 2.30None
Larval trachea4 10 of 4 2.74Up
Larval carcass3 10 of 4 2.52None
S2 cells (growing)1 00 of 4 0.89None
Whole fly1 00 of 4

Looking for CG8354-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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