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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8361-RA through 18771 annotations produced 1 hits



Enhancer of split m7 (HLHm7):

Annotation Number : CG8361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002633
Gbrowse : chr3R:21862759-21863482 (+) // 100.0 //
Probeset : 1625493_at
Accessions : protein= NP_536753;, nucleotide= NM_080505;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0002633.
BioGrid reports that CG8361 interacts with CG9173 CG8924 CG3936 CG3936 CG3497 CG3827 .
TRiP has 2 RNAi stocks for FBgn0002633 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002633 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.50None
Head3 ± 10 of 4 0.30None
Eye7 ± 20 of 4 0.60None
Thoracicoabdominal ganglion4 ± 10 of 4 0.30None
Salivary gland4 ± 10 of 4 0.37None
Crop3 ± 10 of 4 0.30None
Midgut3 ± 10 of 4 0.20None
Tubule4 ± 00 of 4 0.30Down
Hindgut3 ± 00 of 4 0.30None
Heart3 ± 10 of 4 0.25None
Fat body5 ± 40 of 4 0.38None
Ovary4 ± 00 of 4 0.40None
Testis3 ± 10 of 4 0.30None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca3 ± 00 of 4 0.30None
Mated spermatheca3 ± 20 of 4 0.24None
Adult carcass4 ± 10 of 4 0.30None
Larval CNS136 ± 84 of 410.39Up
Larval Salivary gland5 ± 10 of 4 0.39None
Larval midgut4 ± 10 of 4 0.33None
Larval tubule6 ± 21 of 4 0.50None
Larval hindgut6 ± 10 of 4 0.49None
Larval fat body11 ± 40 of 4 0.80None
Larval trachea29 ± 133 of 4 2.21None
Larval carcass12 ± 41 of 4 0.93None
S2 cells (growing)5 ± 00 of 4 0.40None
Whole fly13 ± 43 of 4

Looking for CG8361-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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