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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8367-RD through 18771 annotations produced 1 hits



comb gap (cg):

Annotation Number : CG8367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000289
Gbrowse : chr2R:10061182-10067994 (+) // 100.0 //
Probeset : 1630717_s_at
Accessions : protein= NP_001097304; /// NP_001097305; /// NP_001097306; /// NP_001137666; /// NP_523738; /// NP_725362; /// NP_725363; /// NP_725364;, nucleotide= NM_001103834; /// NM_001103835; /// NM_001103836; /// NM_001144194; /// NM_079014; /// NM_166034; /// NM_166035; /// NM_166036;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0000289.
Homophila reports that CG8367 is a close match (6e-11) to human gene GLIS3;ZNF515 (NP_689842), a gene associated with Diabetes mellitus, neonatal, with congenital hypothyroidism, 610199 (3).
BioGrid reports that CG8367 interacts with CG9796 CG2125 CG2125 CG2125 CG2125 CG9015 .
TRiP has 2 RNAi stocks for FBgn0000289 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 34 of 4 1.60Up
Head36 14 of 4 0.40Down
Eye61 24 of 4 0.65Down
Thoracicoabdominal ganglion111 114 of 4 1.20None
Salivary gland76 44 of 4 0.81Down
Crop58 34 of 4 0.60Down
Midgut41 14 of 4 0.40Down
Tubule34 24 of 4 0.40Down
Hindgut47 24 of 4 0.50Down
Heart37 14 of 4 0.39Down
Fat body46 64 of 4 0.49Down
Ovary201 94 of 4 2.10Up
Testis20 04 of 4 0.20Down
Male accessory glands39 34 of 4 0.40Down
Virgin spermatheca56 24 of 4 0.60Down
Mated spermatheca58 84 of 4 0.62Down
Adult carcass42 54 of 4 0.40Down
Larval CNS129 194 of 4 1.37Up
Larval Salivary gland127 44 of 4 1.35Up
Larval midgut37 24 of 4 0.39Down
Larval tubule39 24 of 4 0.40Down
Larval hindgut39 34 of 4 0.42Down
Larval fat body50 34 of 4 0.50Down
Larval trachea118 24 of 4 1.25Up
Larval carcass48 24 of 4 0.51Down
S2 cells (growing)62 24 of 4 0.66Down
Whole fly94 24 of 4

Looking for CG8367-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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