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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8380-RA through 18771 annotations produced 1 hits



Dopamine transporter (DAT):

Annotation Number : CG8380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034136
Gbrowse : chr2R:12446061-12452763 (-) // 100.0 //
Probeset : 1633205_at
Accessions : protein= NP_523763;, nucleotide= NM_079039;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane
Interpro : 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005329 // dopamine tra
FlyMine data for FBgn0034136.
BDGP gene expression has embryonic in situ data for DAT: 34 pix of staining in 9 body parts.
Homophila reports that CG8380 is a close match (5e-55) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
TRiP has 1 RNAi stocks for FBgn0034136 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034136 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 ± 154 of 425.40Up
Head64 ± 74 of 4 6.40Up
Eye8 ± 12 of 4 0.85None
Thoracicoabdominal ganglion110 ± 64 of 410.90Up
Salivary gland3 ± 30 of 4 0.39None
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.30Down
Hindgut3 ± 00 of 4 0.30Down
Heart3 ± 11 of 4 0.37Down
Fat body5 ± 13 of 4 0.54None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands4 ± 10 of 4 0.50None
Virgin spermatheca9 ± 32 of 4 0.91None
Mated spermatheca4 ± 02 of 4 0.48Down
Adult carcass22 ± 53 of 4 2.20None
Larval CNS73 ± 94 of 4 7.24Up
Larval Salivary gland15 ± 34 of 4 1.49None
Larval midgut1 ± 00 of 4 0.12Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.08Down
Larval fat body3 ± 10 of 4 0.30Down
Larval trachea0 ± 10 of 4 0.08Down
Larval carcass2 ± 11 of 4 0.26Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly10 ± 14 of 4

Looking for CG8380-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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