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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8384-RB through 18771 annotations produced 1 hits



chr3R:21867472-21875634 (+) // 100.0 // (Groucho):

Annotation Number : CG8384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636141_s_at
Accessions : protein= , nucleotide= NP_524514; /// NP_733133; /// NP_733134; /// NP_733135; /// NP_996298;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /
Interpro : primary response to X:A ratio // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred f
FlyMine data for full length.
BioGrid reports that CG8384 interacts with CG8704 CG11579 CG2328 CG7583 CG3619 CG10079 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3497 CG3497 CG3497 CG3497 CG6494 CG6494 CG17964 CG12559 CG6348 CG1849 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain345 104 of 4 4.40Up
Head153 134 of 4 1.90Up
Eye197 164 of 4 2.49Up
Thoracicoabdominal ganglion270 64 of 4 3.40Up
Salivary gland153 44 of 4 1.94Up
Crop158 34 of 4 2.00Up
Midgut92 44 of 4 1.20None
Tubule145 44 of 4 1.80Up
Hindgut156 74 of 4 2.00Up
Heart110 74 of 4 1.39Up
Fat body101 114 of 4 1.29Up
Ovary107 24 of 4 1.40Up
Testis35 34 of 4 0.40Down
Male accessory glands181 44 of 4 2.30Up
Virgin spermatheca99 84 of 4 1.25None
Mated spermatheca94 64 of 4 1.19None
Adult carcass93 44 of 4 1.20None
Larval CNS641 484 of 4 8.09Up
Larval Salivary gland201 124 of 4 2.55Up
Larval midgut110 14 of 4 1.39Up
Larval tubule198 84 of 4 2.50Up
Larval hindgut176 54 of 4 2.23Up
Larval fat body118 54 of 4 1.50Up
Larval trachea291 204 of 4 3.68Up
Larval carcass133 44 of 4 1.69Up
S2 cells (growing)213 74 of 4 2.69Up
Whole fly79 64 of 4

Looking for CG8384-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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