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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8388-RA through 18771 annotations produced 1 hits



(CG8388):

Annotation Number : CG8388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034062
Gbrowse : chr2R:11896905-11898850 (-) // 100.0 //
Probeset : 1627323_at
Accessions : protein= NP_611075;, nucleotide= NM_137231;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0034062.
BDGP gene expression has embryonic in situ data for CG8388: 40 pix of staining in 8 body parts.
Homophila reports that CG8388 is a close match (2e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
VDRC has 2 RNAi stocks for FBgn0034062 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 ± 34 of 4 1.40Up
Head53 ± 14 of 4 0.70Down
Eye43 ± 24 of 4 0.53Down
Thoracicoabdominal ganglion106 ± 44 of 4 1.30Up
Salivary gland79 ± 31 of 4 0.97None
Crop48 ± 24 of 4 0.60Down
Midgut57 ± 24 of 4 0.70Down
Tubule40 ± 10 of 4 0.50Down
Hindgut37 ± 04 of 4 0.50Down
Heart21 ± 14 of 4 0.27Down
Fat body19 ± 52 of 4 0.24Down
Ovary139 ± 34 of 4 1.70Up
Testis332 ± 74 of 4 4.10Up
Male accessory glands74 ± 34 of 4 0.90None
Virgin spermatheca27 ± 11 of 4 0.34Down
Mated spermatheca27 ± 21 of 4 0.34Down
Adult carcass25 ± 60 of 4 0.30Down
Larval CNS70 ± 74 of 4 0.87None
Larval Salivary gland63 ± 34 of 4 0.78Down
Larval midgut36 ± 10 of 4 0.44Down
Larval tubule88 ± 44 of 4 1.10None
Larval hindgut29 ± 24 of 4 0.36Down
Larval fat body243 ± 784 of 4 3.00None
Larval trachea42 ± 34 of 4 0.51Down
Larval carcass39 ± 14 of 4 0.48Down
S2 cells (growing)56 ± 14 of 4 0.69Down
Whole fly81 ± 54 of 4

Looking for CG8388-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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