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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8392-RA through 18771 annotations produced 1 hits



lethal (2) 05070 (Prosbeta1):

Annotation Number : CG8392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010590
Gbrowse : chr2R:11901308-11902285 (-) // 100.0 //
Probeset : 1641616_at
Accessions : protein= NP_652031;, nucleotide= NM_143774;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0010590.
BDGP gene expression has embryonic in situ data for l(2)05070: 4 pix of staining in 1 body parts.
BioGrid reports that CG8392 interacts with CG8454 .
TRiP has 1 RNAi stocks for FBgn0010590 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain334 94 of 4 0.30Down
Head635 64 of 4 0.60Down
Eye410 104 of 4 0.37Down
Thoracicoabdominal ganglion361 104 of 4 0.30Down
Salivary gland648 274 of 4 0.59Down
Crop977 144 of 4 0.90Down
Midgut863 214 of 4 0.80Down
Tubule1090 764 of 4 1.00None
Hindgut612 104 of 4 0.60Down
Heart1797 714 of 4 1.62Up
Fat body1625 1544 of 4 1.47Up
Ovary1196 214 of 4 1.10Up
Testis1127 414 of 4 1.00None
Male accessory glands826 694 of 4 0.70Down
Virgin spermatheca824 234 of 4 0.74Down
Mated spermatheca828 244 of 4 0.75Down
Adult carcass1455 204 of 4 1.30Up
Larval CNS929 624 of 4 0.84Down
Larval Salivary gland1552 604 of 4 1.40Up
Larval midgut960 704 of 4 0.87None
Larval tubule2172 514 of 4 2.00Up
Larval hindgut1086 684 of 4 0.98None
Larval fat body1316 934 of 4 1.20None
Larval trachea1093 524 of 4 0.99None
Larval carcass1562 1484 of 4 1.41None
S2 cells (growing)730 154 of 4 0.66Down
Whole fly1106 204 of 4

Looking for CG8392-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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