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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8394-RA through 18771 annotations produced 1 hits



vesicular GABA transporter (VGAT):

Annotation Number : CG8394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033911
Gbrowse : chr2R:10086504-10088226 (-) // 100.0 //
Probeset : 1625228_at
Accessions : protein= NP_610938;, nucleotide= NM_137094;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015495
FlyMine data for FBgn0033911.
VDRC has 3 RNAi stocks for FBgn0033911 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain309 94 of 429.60Up
Head55 84 of 4 5.30Up
Eye12 14 of 4 1.15None
Thoracicoabdominal ganglion269 294 of 425.80Up
Salivary gland7 30 of 4 0.68None
Crop2 10 of 4 0.30Down
Midgut3 10 of 4 0.30Down
Tubule4 00 of 4 0.40Down
Hindgut5 10 of 4 0.50Down
Heart3 01 of 4 0.33Down
Fat body7 23 of 4 0.76None
Ovary1 00 of 4 0.10Down
Testis3 11 of 4 0.30Down
Male accessory glands10 11 of 4 1.00None
Virgin spermatheca5 10 of 4 0.55Down
Mated spermatheca4 00 of 4 0.38Down
Adult carcass6 10 of 4 0.60None
Larval CNS93 174 of 4 8.97Up
Larval Salivary gland6 20 of 4 0.61None
Larval midgut5 10 of 4 0.53None
Larval tubule4 20 of 4 0.40None
Larval hindgut2 10 of 4 0.28Down
Larval fat body4 10 of 4 0.50None
Larval trachea4 42 of 4 0.47None
Larval carcass4 00 of 4 0.43Down
S2 cells (growing)4 11 of 4 0.45Down
Whole fly10 13 of 4

Looking for CG8394-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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