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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8397-RA through 18771 annotations produced 1 hits



/// (CG5538 /// CG8397):

Annotation Number : CG8397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034066
Gbrowse : chr2R:11903545-11904679 (-) // 100.0 //
Probeset : 1641494_at
Accessions : protein= NP_611078;, nucleotide= NM_137234;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0030246 // carbohydrate binding // infer
FlyMine data for FBgn0034066.
TRiP has 1 RNAi stocks for FBgn0034066 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain453 ± 114 of 4 1.30Up
Head513 ± 54 of 4 1.40Up
Eye1031 ± 314 of 4 2.88Up
Thoracicoabdominal ganglion461 ± 74 of 4 1.30Up
Salivary gland661 ± 154 of 4 1.85Up
Crop811 ± 184 of 4 2.30Up
Midgut436 ± 44 of 4 1.20Up
Tubule477 ± 194 of 4 1.30Up
Hindgut707 ± 174 of 4 2.00Up
Heart798 ± 294 of 4 2.23Up
Fat body649 ± 714 of 4 1.81Up
Ovary315 ± 14 of 4 0.90Down
Testis627 ± 224 of 4 1.80Up
Male accessory glands512 ± 354 of 4 1.40Up
Virgin spermatheca422 ± 74 of 4 1.18Up
Mated spermatheca321 ± 94 of 4 0.90Down
Adult carcass485 ± 154 of 4 1.40Up
Larval CNS312 ± 284 of 4 0.87Down
Larval Salivary gland502 ± 164 of 4 1.40Up
Larval midgut229 ± 104 of 4 0.64Down
Larval tubule490 ± 104 of 4 1.40Up
Larval hindgut344 ± 34 of 4 0.96None
Larval fat body560 ± 144 of 4 1.60Up
Larval trachea283 ± 234 of 4 0.79Down
Larval carcass315 ± 94 of 4 0.88Down
S2 cells (growing)613 ± 104 of 4 1.71Up
Whole fly358 ± 94 of 4

Looking for CG8397-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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