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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8398-RA through 18771 annotations produced 1 hits



(CG8398):

Annotation Number : CG8398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035708
Gbrowse : chr3L:6602424-6611282 (+) // 100.0 //
Probeset : 1624347_s_at
Accessions : protein= NP_648051; /// NP_729180; /// NP_996005;, nucleotide= NM_139794; /// NM_168174; /// NM_206283;
FlyMine data for FBgn0035708.
BDGP gene expression has embryonic in situ data for CG8398: 11 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0035708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 1.20Up
Head19 14 of 4 0.60Down
Eye7 12 of 4 0.23Down
Thoracicoabdominal ganglion28 34 of 4 0.90None
Salivary gland87 44 of 4 2.66Up
Crop70 34 of 4 2.10Up
Midgut40 24 of 4 1.20None
Tubule9 00 of 4 0.30Down
Hindgut31 14 of 4 0.90None
Heart15 04 of 4 0.46Down
Fat body9 40 of 4 0.30Down
Ovary5 00 of 4 0.20Down
Testis275 64 of 4 8.30Up
Male accessory glands33 24 of 4 1.00None
Virgin spermatheca14 11 of 4 0.43Down
Mated spermatheca14 11 of 4 0.45Down
Adult carcass22 42 of 4 0.70None
Larval CNS18 44 of 4 0.56Down
Larval Salivary gland21 43 of 4 0.64None
Larval midgut23 13 of 4 0.71Down
Larval tubule24 13 of 4 0.70Down
Larval hindgut19 14 of 4 0.59Down
Larval fat body31 113 of 4 1.00None
Larval trachea1 20 of 4 0.06Down
Larval carcass17 23 of 4 0.54Down
S2 cells (growing)45 34 of 4 1.39Up
Whole fly33 14 of 4

Looking for CG8398-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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