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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8408-RA through 18771 annotations produced 1 hits



(CG8408):

Annotation Number : CG8408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030850
Gbrowse : chrX:17517246-17521929 (-) // 100.0 //
Probeset : 1634053_at
Accessions : protein= NP_001138217; /// NP_573225;, nucleotide= NM_001144745; /// NM_132997;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0030850.
BDGP gene expression has embryonic in situ data for CG8408: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030850 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain509 ± 64 of 4 1.40Up
Head287 ± 44 of 4 0.80Down
Eye208 ± 94 of 4 0.56Down
Thoracicoabdominal ganglion420 ± 84 of 4 1.10Up
Salivary gland674 ± 394 of 4 1.82Up
Crop270 ± 74 of 4 0.70Down
Midgut276 ± 54 of 4 0.70Down
Tubule1011 ± 1124 of 4 2.70Up
Hindgut466 ± 64 of 4 1.30Up
Heart506 ± 514 of 4 1.36None
Fat body463 ± 814 of 4 1.25None
Ovary677 ± 84 of 4 1.80Up
Testis111 ± 44 of 4 0.30Down
Male accessory glands418 ± 154 of 4 1.10None
Virgin spermatheca779 ± 844 of 4 2.10Up
Mated spermatheca411 ± 214 of 4 1.11None
Adult carcass280 ± 194 of 4 0.80Down
Larval CNS337 ± 174 of 4 0.91None
Larval Salivary gland421 ± 334 of 4 1.13None
Larval midgut167 ± 74 of 4 0.45Down
Larval tubule443 ± 204 of 4 1.20Up
Larval hindgut395 ± 114 of 4 1.07None
Larval fat body125 ± 104 of 4 0.30Down
Larval trachea71 ± 74 of 4 0.19Down
Larval carcass167 ± 74 of 4 0.45Down
S2 cells (growing)620 ± 114 of 4 1.67Up
Whole fly371 ± 124 of 4

Looking for CG8408-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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