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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8411-RA through 18771 annotations produced 1 hits



germ cell-less (gcl):

Annotation Number : CG8411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005695
Gbrowse : chr2R:4611764-4616504 (+) // 99.8 //
Probeset : 1628210_at
Accessions : protein= NP_724708;, nucleotide= NM_165622;
Pathway : DNA-dependent // traceable author statement"
Interpro : 0005634 // nucleus // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005737 /
FlyMine data for FBgn0005695.
BDGP gene expression has embryonic in situ data for gcl: 14 pix of staining in 19 body parts.
TRiP has 3 RNAi stocks for FBgn0005695 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005695 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 14 of 4 0.50Down
Head111 44 of 4 0.30Down
Eye80 34 of 4 0.20Down
Thoracicoabdominal ganglion136 34 of 4 0.30Down
Salivary gland137 94 of 4 0.34Down
Crop136 34 of 4 0.30Down
Midgut80 54 of 4 0.20Down
Tubule123 24 of 4 0.30Down
Hindgut125 44 of 4 0.30Down
Heart85 44 of 4 0.21Down
Fat body134 54 of 4 0.34Down
Ovary1047 104 of 4 2.60Up
Testis21 14 of 4 0.10Down
Male accessory glands139 74 of 4 0.30Down
Virgin spermatheca148 104 of 4 0.37Down
Mated spermatheca133 64 of 4 0.33Down
Adult carcass114 114 of 4 0.30Down
Larval CNS116 54 of 4 0.29Down
Larval Salivary gland173 124 of 4 0.43Down
Larval midgut140 94 of 4 0.35Down
Larval tubule180 54 of 4 0.50Down
Larval hindgut120 44 of 4 0.30Down
Larval fat body86 64 of 4 0.20Down
Larval trachea116 174 of 4 0.29Down
Larval carcass108 144 of 4 0.27Down
S2 cells (growing)84 24 of 4 0.21Down
Whole fly400 154 of 4

Looking for CG8411-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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