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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8412-RA through 18771 annotations produced 1 hits



(CG8412):

Annotation Number : CG8412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037743
Gbrowse : chr3R:5582214-5585035 (+) // 99.84 //
Probeset : 1634528_at
Accessions : protein= NP_649939;, nucleotide= NM_141682;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum
Interpro : "0000009 // alpha-1
FlyMine data for FBgn0037743.
Homophila reports that CG8412 is a close match (4e-102) to human gene ALG12 (NP_077010), a gene associated with Congenital disorder of glycosylation, type Ig, 607143 (3).
TRiP has 1 RNAi stocks for FBgn0037743 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 24 of 4 2.20Up
Head251 ± 114 of 4 2.90Up
Eye168 ± 134 of 4 1.91Up
Thoracicoabdominal ganglion232 ± 94 of 4 2.60Up
Salivary gland397 ± 214 of 4 4.53Up
Crop168 ± 34 of 4 1.90Up
Midgut94 ± 94 of 4 1.10None
Tubule136 ± 64 of 4 1.60Up
Hindgut127 ± 34 of 4 1.40Up
Heart158 ± 34 of 4 1.80Up
Fat body191 ± 284 of 4 2.18Up
Ovary74 ± 24 of 4 0.90Down
Testis37 ± 14 of 4 0.40Down
Male accessory glands275 ± 64 of 4 3.10Up
Virgin spermatheca222 ± 64 of 4 2.53Up
Mated spermatheca220 ± 174 of 4 2.51Up
Adult carcass174 ± 94 of 4 2.00Up
Larval CNS92 ± 54 of 4 1.06None
Larval Salivary gland376 ± 304 of 4 4.28Up
Larval midgut90 ± 64 of 4 1.04None
Larval tubule140 ± 04 of 4 1.60Up
Larval hindgut122 ± 44 of 4 1.40Up
Larval fat body188 ± 194 of 4 2.10Up
Larval trachea96 ± 64 of 4 1.10None
Larval carcass342 ± 364 of 4 3.89Up
S2 cells (growing)151 ± 54 of 4 1.73Up
Whole fly87 ± 24 of 4

Looking for CG8412-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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