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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8414-RA through 18771 annotations produced 1 hits


Annotation Number : CG8414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034073
Gbrowse : chr2R:11986806-11990108 (-) // 100.0 //
Probeset : 1634421_at
Accessions : protein= NP_611084;, nucleotide= NM_137240;
FlyMine data for FBgn0034073.
BDGP gene expression has embryonic in situ data for CG8414: 10 pix of staining in 11 body parts.
BioGrid reports that CG8414 interacts with CG9253 .
TRiP has 1 RNAi stocks for FBgn0034073 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 04 of 4 0.30Down
Head40 24 of 4 0.30Down
Eye27 54 of 4 0.21Down
Thoracicoabdominal ganglion46 14 of 4 0.40Down
Salivary gland62 34 of 4 0.49Down
Crop49 14 of 4 0.40Down
Midgut76 54 of 4 0.60Down
Tubule71 54 of 4 0.60Down
Hindgut46 34 of 4 0.40Down
Heart35 24 of 4 0.27Down
Fat body66 104 of 4 0.52Down
Ovary320 64 of 4 2.50Up
Testis36 24 of 4 0.30Down
Male accessory glands81 54 of 4 0.60Down
Virgin spermatheca79 54 of 4 0.62Down
Mated spermatheca93 44 of 4 0.73Down
Adult carcass47 54 of 4 0.40Down
Larval CNS103 64 of 4 0.81Down
Larval Salivary gland88 34 of 4 0.69Down
Larval midgut67 54 of 4 0.52Down
Larval tubule36 24 of 4 0.30Down
Larval hindgut64 74 of 4 0.50Down
Larval fat body28 43 of 4 0.20Down
Larval trachea68 104 of 4 0.54Down
Larval carcass66 144 of 4 0.52Down
S2 cells (growing)104 34 of 4 0.82Down
Whole fly128 54 of 4

Looking for CG8414-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime