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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8415-RA through 18771 annotations produced 1 hits



Ribosomal protein S23 (RpS23):

Annotation Number : CG8415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033912
Gbrowse : chr2R:10102739-10104132 (-) // 100.0 //
Probeset : 1638832_at
Accessions : protein= NP_610939;, nucleotide= NM_137095;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0033912.
BioGrid reports that CG8415 interacts with CG9506 CG9511 CG9797 .
VDRC has 5 RNAi stocks for FBgn0033912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2871 ± 314 of 4 0.70Down
Head4764 ± 1644 of 4 1.10None
Eye7300 ± 1054 of 4 1.76Up
Thoracicoabdominal ganglion3801 ± 504 of 4 0.90None
Salivary gland13436 ± 3734 of 4 3.24Up
Crop6313 ± 4094 of 4 1.50Up
Midgut5226 ± 994 of 4 1.30Up
Tubule4905 ± 514 of 4 1.20Up
Hindgut5323 ± 1134 of 4 1.30Up
Heart7174 ± 5834 of 4 1.73Up
Fat body5907 ± 8144 of 4 1.42Up
Ovary3578 ± 664 of 4 0.90None
Testis1437 ± 484 of 4 0.30Down
Male accessory glands9010 ± 2224 of 4 2.20Up
Virgin spermatheca5111 ± 2424 of 4 1.23Up
Mated spermatheca5331 ± 1514 of 4 1.29Up
Adult carcass6232 ± 3264 of 4 1.50Up
Larval CNS2786 ± 2064 of 4 0.67Down
Larval Salivary gland7899 ± 2944 of 4 1.91Up
Larval midgut4459 ± 1614 of 4 1.08None
Larval tubule5685 ± 1314 of 4 1.40Up
Larval hindgut4577 ± 284 of 4 1.10None
Larval fat body7999 ± 8964 of 4 1.90Up
Larval trachea6369 ± 1894 of 4 1.54Up
Larval carcass4785 ± 3694 of 4 1.15None
S2 cells (growing)4483 ± 1004 of 4 1.08None
Whole fly4145 ± 2004 of 4

Looking for CG8415-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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