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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8416-RB through 18771 annotations produced 2 hits


rho1 kinase (Rho1):

Annotation Number : CG8416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014020
Gbrowse : chr2R:11990190-11994734 (+) // 100.0 //
Probeset : 1625488_s_at
Accessions : protein= NP_477098; /// NP_599135; /// NP_599136; /// NP_725524; /// NP_995849; /// NP_995850; /// NP_995851;, nucleotide= NM_057750; /// NM_134308; /// NM_134309; /// NM_166139; /// NM_206127; /// NM_206128; /// NM_206129;
Pathway : spreading of leading edge cells // inferred from mutant phenotype /// 0007405 // neuroblast proliferation // inferred f
Interpro : open tracheal system // traceable author statement /// 0035149 // lumen formation
FlyMine data for FBgn0014020.
BDGP gene expression has embryonic in situ data for Rho1: 10 pix of staining in 18 body parts.
Homophila reports that CG8416 is a close match (5e-12) to human gene KRAS2;NS3;RASK2 (NP_203524), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
BioGrid reports that CG8416 interacts with CG8446 CG3399 CG17678 CG18361 CG18361 CG17697 CG17697 CG8114 CG8114 CG8114 CG8114 CG32156 CG13521 CG17947 CG40411 CG2248 CG2248 CG2248 CG2248 CG1768 CG12019 CG10701 CG32555 CG9635 CG9635 CG8817 CG17484 CG17245 CG9412 CG2049 CG9774 .
TRiP has 2 RNAi stocks for FBgn0014020 available for purchase.
VDRC has 2 RNAi stocks for FBgn0014020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain908 ± 94 of 4 1.30Up
Head1159 ± 814 of 4 1.70Up
Eye771 ± 294 of 4 1.14None
Thoracicoabdominal ganglion931 ± 394 of 4 1.40Up
Salivary gland1810 ± 824 of 4 2.68Up
Crop2332 ± 614 of 4 3.50Up
Midgut1073 ± 304 of 4 1.60Up
Tubule2220 ± 304 of 4 3.30Up
Hindgut1531 ± 394 of 4 2.30Up
Heart1903 ± 944 of 4 2.82Up
Fat body1513 ± 1424 of 4 2.24Up
Ovary363 ± 94 of 4 0.50Down
Testis394 ± 104 of 4 0.60Down
Male accessory glands1895 ± 474 of 4 2.80Up
Virgin spermatheca2455 ± 494 of 4 3.63Up
Mated spermatheca2154 ± 824 of 4 3.19Up
Adult carcass926 ± 304 of 4 1.40Up
Larval CNS1550 ± 1204 of 4 2.29Up
Larval Salivary gland1463 ± 534 of 4 2.16Up
Larval midgut1211 ± 274 of 4 1.79Up
Larval tubule2140 ± 524 of 4 3.20Up
Larval hindgut1885 ± 254 of 4 2.79Up
Larval fat body1102 ± 1294 of 4 1.60Up
Larval trachea1430 ± 1094 of 4 2.12Up
Larval carcass1457 ± 494 of 4 2.16Up
S2 cells (growing)1637 ± 244 of 4 2.42Up
Whole fly675 ± 484 of 4


rho1 kinase (Rho1):

Annotation Number : CG8416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014020
Gbrowse : chr2R:11990190-11993900 (+) // 100.0 //
Probeset : 1626808_s_at
Accessions : protein= NP_477098; /// NP_599135; /// NP_599136; /// NP_725524; /// NP_995849; /// NP_995850; /// NP_995851;, nucleotide= NM_057750; /// NM_134308; /// NM_134309; /// NM_166139; /// NM_206127; /// NM_206128; /// NM_206129;
Pathway : spreading of leading edge cells // inferred from mutant phenotype /// 0007405 // neuroblast proliferation // inferred f
Interpro : open tracheal system // traceable author statement /// 0035149 // lumen formation
FlyMine data for FBgn0014020.
BDGP gene expression has embryonic in situ data for Rho1: 10 pix of staining in 18 body parts.
Homophila reports that CG8416 is a close match (5e-12) to human gene KRAS2;NS3;RASK2 (NP_203524), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
BioGrid reports that CG8416 interacts with CG8446 CG3399 CG17678 CG18361 CG18361 CG17697 CG17697 CG8114 CG8114 CG8114 CG8114 CG32156 CG13521 CG17947 CG40411 CG2248 CG2248 CG2248 CG2248 CG1768 CG12019 CG10701 CG32555 CG9635 CG9635 CG8817 CG17484 CG17245 CG9412 CG2049 CG9774 .
TRiP has 2 RNAi stocks for FBgn0014020 available for purchase.
VDRC has 2 RNAi stocks for FBgn0014020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain534 ± 164 of 4 0.80Down
Head725 ± 284 of 4 1.10None
Eye495 ± 234 of 4 0.72Down
Thoracicoabdominal ganglion593 ± 154 of 4 0.90Down
Salivary gland547 ± 424 of 4 0.80Down
Crop2431 ± 484 of 4 3.50Up
Midgut1300 ± 534 of 4 1.90Up
Tubule1116 ± 574 of 4 1.60Up
Hindgut1524 ± 624 of 4 2.20Up
Heart1592 ± 84 of 4 2.32Up
Fat body1647 ± 1354 of 4 2.40Up
Ovary809 ± 84 of 4 1.20Up
Testis310 ± 104 of 4 0.50Down
Male accessory glands897 ± 184 of 4 1.30Up
Virgin spermatheca1546 ± 544 of 4 2.25Up
Mated spermatheca1515 ± 414 of 4 2.21Up
Adult carcass949 ± 474 of 4 1.40Up
Larval CNS976 ± 754 of 4 1.42Up
Larval Salivary gland1366 ± 534 of 4 1.99Up
Larval midgut1287 ± 404 of 4 1.88Up
Larval tubule1472 ± 304 of 4 2.10Up
Larval hindgut1679 ± 514 of 4 2.45Up
Larval fat body1593 ± 1944 of 4 2.30Up
Larval trachea1308 ± 464 of 4 1.91Up
Larval carcass1235 ± 594 of 4 1.80Up
S2 cells (growing)2155 ± 464 of 4 3.14Up
Whole fly686 ± 234 of 4

Looking for CG8416-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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