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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8426-RA through 18771 annotations produced 1 hits



lethal (2) NC136 (l(2)NC136):

Annotation Number : CG8426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033029
Gbrowse : chr2R:1544422-1550725 (-) // 100.0 //
Probeset : 1634881_at
Accessions : protein= NP_610176;, nucleotide= NM_136332;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0030528 // transcription regulator activity // inferred from electronic annotation
FlyMine data for FBgn0033029.
TRiP has 2 RNAi stocks for FBgn0033029 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 104 of 4 1.20None
Head136 64 of 4 0.70Down
Eye80 24 of 4 0.40Down
Thoracicoabdominal ganglion193 54 of 4 1.00None
Salivary gland162 104 of 4 0.81Down
Crop215 54 of 4 1.10None
Midgut157 64 of 4 0.80Down
Tubule180 34 of 4 0.90Down
Hindgut184 44 of 4 0.90None
Heart92 34 of 4 0.46Down
Fat body167 74 of 4 0.84Down
Ovary482 144 of 4 2.40Up
Testis105 24 of 4 0.50Down
Male accessory glands242 34 of 4 1.20Up
Virgin spermatheca243 104 of 4 1.21Up
Mated spermatheca253 164 of 4 1.27Up
Adult carcass110 94 of 4 0.60Down
Larval CNS476 564 of 4 2.38Up
Larval Salivary gland345 164 of 4 1.72Up
Larval midgut151 54 of 4 0.76Down
Larval tubule254 34 of 4 1.30Up
Larval hindgut270 64 of 4 1.35Up
Larval fat body183 94 of 4 0.90None
Larval trachea188 124 of 4 0.94None
Larval carcass225 24 of 4 1.13Up
S2 cells (growing)362 74 of 4 1.81Up
Whole fly200 74 of 4

Looking for CG8426-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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