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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8428-RE through 18771 annotations produced 1 hits



spinster (spin):

Annotation Number : CG8428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086676
Gbrowse : chr2R:12012487-12025743 (+) // 100.0 //
Probeset : 1630278_s_at
Accessions : protein= NP_524823; /// NP_725530; /// NP_725531; /// NP_725532; /// NP_725533;, nucleotide= NM_080084; /// NM_166144; /// NM_166145; /// NM_166146; /// NM_166147;
Pathway : 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic
FlyMine data for FBgn0086676.
BioGrid reports that CG8428 interacts with CG1891 CG14026 CG10776 .
TRiP has 1 RNAi stocks for FBgn0086676 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain341 ± 94 of 4 0.70None
Head720 ± 364 of 4 1.40Up
Eye785 ± 514 of 4 1.55Up
Thoracicoabdominal ganglion441 ± 134 of 4 0.90None
Salivary gland244 ± 234 of 4 0.48Down
Crop952 ± 384 of 4 1.90Up
Midgut333 ± 134 of 4 0.70Down
Tubule456 ± 554 of 4 0.90None
Hindgut819 ± 104 of 4 1.60Up
Heart1942 ± 1134 of 4 3.84Up
Fat body2163 ± 2564 of 4 4.28Up
Ovary519 ± 94 of 4 1.00None
Testis164 ± 94 of 4 0.30Down
Male accessory glands273 ± 104 of 4 0.50Down
Virgin spermatheca1879 ± 2274 of 4 3.72Up
Mated spermatheca1714 ± 764 of 4 3.39Up
Adult carcass954 ± 254 of 4 1.90Up
Larval CNS461 ± 154 of 4 0.91None
Larval Salivary gland638 ± 284 of 4 1.26None
Larval midgut287 ± 184 of 4 0.57Down
Larval tubule149 ± 74 of 4 0.30Down
Larval hindgut572 ± 314 of 4 1.13None
Larval fat body169 ± 194 of 4 0.30Down
Larval trachea473 ± 944 of 4 0.94None
Larval carcass442 ± 154 of 4 0.88None
S2 cells (growing)879 ± 214 of 4 1.74Up
Whole fly505 ± 524 of 4

Looking for CG8428-RE. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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