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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8431-RA through 18771 annotations produced 1 hits



Cysteinyl-tRNA synthetase (Aats-cys):

Annotation Number : CG8431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027091
Gbrowse : chr2R:12030654-12033415 (+) // 100.0 //
Probeset : 1625878_at
Accessions : protein= NP_611087;, nucleotide= NM_137243;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred
FlyMine data for FBgn0027091.
VDRC has 5 RNAi stocks for FBgn0027091 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 14 of 4 0.50Down
Head87 104 of 4 0.70Down
Eye45 24 of 4 0.37Down
Thoracicoabdominal ganglion58 34 of 4 0.50Down
Salivary gland93 104 of 4 0.76None
Crop88 34 of 4 0.70Down
Midgut131 84 of 4 1.10None
Tubule191 164 of 4 1.60Up
Hindgut92 44 of 4 0.70Down
Heart51 24 of 4 0.41Down
Fat body95 154 of 4 0.77Down
Ovary196 44 of 4 1.60Up
Testis64 14 of 4 0.50Down
Male accessory glands112 74 of 4 0.90None
Virgin spermatheca100 34 of 4 0.81Down
Mated spermatheca129 54 of 4 1.05None
Adult carcass64 114 of 4 0.50Down
Larval CNS134 64 of 4 1.09None
Larval Salivary gland425 424 of 4 3.45Up
Larval midgut115 144 of 4 0.94None
Larval tubule98 44 of 4 0.80Down
Larval hindgut139 84 of 4 1.13None
Larval fat body93 84 of 4 0.80Down
Larval trachea135 264 of 4 1.10None
Larval carcass165 184 of 4 1.34None
S2 cells (growing)459 124 of 4 3.74Up
Whole fly123 44 of 4

Looking for CG8431-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime