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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8435-RA through 18771 annotations produced 1 hits



(CG8435):

Annotation Number : CG8435
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034084
Gbrowse : chr2R:12057104-12058354 (-) // 100.0 //
Probeset : 1631074_at
Accessions : protein= NP_611092;, nucleotide= NM_137248;
FlyMine data for FBgn0034084.
BDGP gene expression has embryonic in situ data for CG8435: 12 pix of staining in 4 body parts.
BioGrid reports that CG8435 interacts with CG9426 .
TRiP has 1 RNAi stocks for FBgn0034084 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 14 of 4 0.60Down
Head44 ± 54 of 4 0.50Down
Eye45 ± 34 of 4 0.47Down
Thoracicoabdominal ganglion35 ± 24 of 4 0.40Down
Salivary gland53 ± 43 of 4 0.55Down
Crop62 ± 34 of 4 0.60Down
Midgut36 ± 23 of 4 0.40Down
Tubule81 ± 14 of 4 0.90Down
Hindgut56 ± 14 of 4 0.60Down
Heart53 ± 14 of 4 0.56Down
Fat body48 ± 74 of 4 0.51Down
Ovary192 ± 24 of 4 2.00Up
Testis64 ± 34 of 4 0.70Down
Male accessory glands42 ± 24 of 4 0.40Down
Virgin spermatheca47 ± 24 of 4 0.49Down
Mated spermatheca56 ± 14 of 4 0.59Down
Adult carcass31 ± 63 of 4 0.30Down
Larval CNS69 ± 154 of 4 0.73Down
Larval Salivary gland63 ± 44 of 4 0.66Down
Larval midgut30 ± 24 of 4 0.31Down
Larval tubule63 ± 24 of 4 0.70Down
Larval hindgut41 ± 74 of 4 0.44Down
Larval fat body35 ± 14 of 4 0.40Down
Larval trachea61 ± 44 of 4 0.64Down
Larval carcass44 ± 34 of 4 0.47Down
S2 cells (growing)49 ± 24 of 4 0.52Down
Whole fly96 ± 54 of 4

Looking for CG8435-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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