FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8439-RA through 18771 annotations produced 1 hits

T-complex Chaperonin 5 (Cct5):

Annotation Number : CG8439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010621
Gbrowse : chr2R:8062280-8065039 (+) // 100.0 //
Probeset : 1624419_a_at
Accessions : protein= NP_523707; /// NP_725107;, nucleotide= NM_078983; /// NM_165867;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // inferred f
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0010621.
BDGP gene expression has embryonic in situ data for Cct5: 17 pix of staining in 25 body parts.
Homophila reports that CG8439 is a close match (0) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
TRiP has 1 RNAi stocks for FBgn0010621 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010621 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	196 ± 5	4 of 4	0.20	Down
Head	320 ± 13	4 of 4	0.30	Down
Eye	255 ± 7	4 of 4	0.25	Down
Thoracicoabdominal ganglion	269 ± 3	4 of 4	0.30	Down
Salivary gland	294 ± 11	4 of 4	0.29	Down
Crop	663 ± 6	4 of 4	0.70	Down
Midgut	644 ± 30	4 of 4	0.60	Down
Tubule	793 ± 67	4 of 4	0.80	Down
Hindgut	586 ± 5	4 of 4	0.60	Down
Heart	389 ± 16	4 of 4	0.39	Down
Fat body	378 ± 43	4 of 4	0.38	Down
Ovary	1440 ± 7	4 of 4	1.40	Up
Testis	325 ± 6	4 of 4	0.30	Down
Male accessory glands	498 ± 15	4 of 4	0.50	Down
Virgin spermatheca	495 ± 23	4 of 4	0.49	Down
Mated spermatheca	709 ± 27	4 of 4	0.70	Down
Adult carcass	332 ± 28	4 of 4	0.30	Down
Larval CNS	1102 ± 18	4 of 4	1.09	None
Larval Salivary gland	1167 ± 33	4 of 4	1.16	Up
Larval midgut	758 ± 52	4 of 4	0.75	Down
Larval tubule	563 ± 20	4 of 4	0.60	Down
Larval hindgut	1045 ± 62	4 of 4	1.04	None
Larval fat body	289 ± 17	4 of 4	0.30	Down
Larval trachea	1391 ± 231	4 of 4	1.38	Up
Larval carcass	1042 ± 92	4 of 4	1.03	None
S2 cells (growing)	813 ± 11	4 of 4	0.81	Down
Whole fly	1007 ± 31	4 of 4

Looking for CG8439-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720