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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8444-RA through 18771 annotations produced 1 hits



(VhaM8.9):

Annotation Number : CG8444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037671
Gbrowse : chr3R:5086362-5088315 (+) // 100.0 //
Probeset : 1629411_at
Accessions : protein= NP_649876;, nucleotide= NM_141619;
Pathway : planar cell polarity pathway // inferred from genetic interaction"
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic
FlyMine data for FBgn0037671.
BDGP gene expression has embryonic in situ data for CG8444: 13 pix of staining in 19 body parts.
Homophila reports that CG8444 is a close match (1e-21) to human gene ATP6AP2;ATP6M8-9;MRXE;XMRE (NP_005756), a gene associated with Mental retardation, X-linked, with epilepsy, 300423 (3).
VDRC has 2 RNAi stocks for FBgn0037671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1567 144 of 4 1.70Up
Head1114 514 of 4 1.20Up
Eye1317 194 of 4 1.45Up
Thoracicoabdominal ganglion1536 94 of 4 1.70Up
Salivary gland7411 1584 of 4 8.15Up
Crop967 224 of 4 1.10None
Midgut2656 474 of 4 2.90Up
Tubule2939 694 of 4 3.20Up
Hindgut4061 984 of 4 4.50Up
Heart1233 294 of 4 1.36Up
Fat body571 314 of 4 0.63Down
Ovary767 174 of 4 0.80Down
Testis585 144 of 4 0.60Down
Male accessory glands709 114 of 4 0.80Down
Virgin spermatheca781 354 of 4 0.86None
Mated spermatheca797 444 of 4 0.88None
Adult carcass905 204 of 4 1.00None
Larval CNS916 764 of 4 1.01None
Larval Salivary gland1859 444 of 4 2.05Up
Larval midgut2985 974 of 4 3.28Up
Larval tubule3294 1704 of 4 3.60Up
Larval hindgut3934 204 of 4 4.33Up
Larval fat body1200 924 of 4 1.30Up
Larval trachea2142 1554 of 4 2.36Up
Larval carcass1625 524 of 4 1.79Up
S2 cells (growing)1378 184 of 4 1.52Up
Whole fly908 384 of 4

Looking for CG8444-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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