FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8448-RD through 18771 annotations produced 1 hits

mrj (mrj):

Annotation Number : CG8448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034091
Gbrowse : chr2R:12090826-12109301 (-) // 100.0 //
Probeset : 1638963_s_at
Accessions : protein= NP_725541; /// NP_725542; /// NP_725543; /// NP_725544; /// NP_725545;, nucleotide= NM_166152; /// NM_166153; /// NM_166154; /// NM_166155; /// NM_166156;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation
FlyMine data for FBgn0034091.
BioGrid reports that CG8448 interacts with CG9784 .
VDRC has 2 RNAi stocks for FBgn0034091 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	438 ± 14	4 of 4	0.90	None
Head	379 ± 24	4 of 4	0.80	None
Eye	191 ± 6	4 of 4	0.40	Down
Thoracicoabdominal ganglion	395 ± 17	4 of 4	0.80	None
Salivary gland	207 ± 12	4 of 4	0.44	Down
Crop	248 ± 8	4 of 4	0.50	Down
Midgut	340 ± 13	4 of 4	0.70	Down
Tubule	327 ± 37	4 of 4	0.70	Down
Hindgut	235 ± 11	4 of 4	0.50	Down
Heart	206 ± 12	4 of 4	0.43	Down
Fat body	259 ± 18	4 of 4	0.55	Down
Ovary	610 ± 14	4 of 4	1.30	Up
Testis	169 ± 3	4 of 4	0.40	Down
Male accessory glands	222 ± 22	4 of 4	0.50	Down
Virgin spermatheca	526 ± 34	4 of 4	1.11	None
Mated spermatheca	554 ± 26	4 of 4	1.16	None
Adult carcass	354 ± 31	4 of 4	0.70	Down
Larval CNS	428 ± 38	4 of 4	0.90	None
Larval Salivary gland	501 ± 69	4 of 4	1.05	None
Larval midgut	372 ± 18	4 of 4	0.78	Down
Larval tubule	240 ± 5	4 of 4	0.50	Down
Larval hindgut	360 ± 15	4 of 4	0.76	Down
Larval fat body	260 ± 25	4 of 4	0.50	Down
Larval trachea	279 ± 21	4 of 4	0.59	Down
Larval carcass	463 ± 21	4 of 4	0.98	None
S2 cells (growing)	11 ± 1	4 of 4	0.03	Down
Whole fly	475 ± 31	4 of 4

Looking for CG8448-RD. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720