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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8451-RA through 18771 annotations produced 1 hits



NA-dependent multivitamin transporter (CG8451):

Annotation Number : CG8451
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031998
Gbrowse : chr2L:8200464-8205128 (-) // 100.0 //
Probeset : 1625857_at
Accessions : protein= NP_609192;, nucleotide= NM_135348;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin tran
FlyMine data for FBgn0031998.
BDGP gene expression has embryonic in situ data for CG8451: 4 pix of staining in 1 body parts.
Homophila reports that CG8451 is a close match (1e-64) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 3 RNAi stocks for FBgn0031998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 54 of 4 0.80None
Head451 344 of 4 1.60Up
Eye435 264 of 4 1.54Up
Thoracicoabdominal ganglion251 64 of 4 0.90None
Salivary gland190 164 of 4 0.67Down
Crop317 74 of 4 1.10None
Midgut716 404 of 4 2.50Up
Tubule1435 554 of 4 5.10Up
Hindgut362 144 of 4 1.30Up
Heart530 204 of 4 1.88Up
Fat body785 1254 of 4 2.78Up
Ovary295 24 of 4 1.00None
Testis293 164 of 4 1.00None
Male accessory glands1422 734 of 4 5.00Up
Virgin spermatheca895 274 of 4 3.17Up
Mated spermatheca865 194 of 4 3.07Up
Adult carcass424 134 of 4 1.50Up
Larval CNS69 104 of 4 0.24Down
Larval Salivary gland106 64 of 4 0.38Down
Larval midgut107 114 of 4 0.38Down
Larval tubule196 124 of 4 0.70Down
Larval hindgut153 44 of 4 0.54Down
Larval fat body888 774 of 4 3.10Up
Larval trachea143 264 of 4 0.51Down
Larval carcass197 194 of 4 0.70Down
S2 cells (growing)115 74 of 4 0.41Down
Whole fly282 174 of 4

Looking for CG8451-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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