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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8455-RB through 18771 annotations produced 1 hits



(CG8455):

Annotation Number : CG8455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031997
Gbrowse : chr2L:8198958-8200651 (+) // 100.0 //
Probeset : 1630877_a_at
Accessions : protein= NP_609191; /// NP_723359;, nucleotide= NM_135347; /// NM_164798;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from e
FlyMine data for FBgn0031997.
BDGP gene expression has embryonic in situ data for CG8455: 4 pix of staining in 1 body parts.
BioGrid reports that CG8455 interacts with CG1034 CG1871 CG15043 CG15676 CG2948 CG5708 CG3629 CG7948 CG5568 CG5731 CG15218 CG7148 CG31811 CG9842 CG2189 CG11266 CG3938 CG1120 CG4552 CG8591 CG8823 CG4394 CG4771 CG4673 CG3193 CG13900 CG9027 CG11759 CG8181 .
VDRC has 1 RNAi stocks for FBgn0031997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 54 of 4 1.60Up
Head140 44 of 4 1.10None
Eye184 64 of 4 1.39Up
Thoracicoabdominal ganglion237 64 of 4 1.80Up
Salivary gland96 34 of 4 0.72Down
Crop145 54 of 4 1.10None
Midgut98 64 of 4 0.70Down
Tubule78 44 of 4 0.60Down
Hindgut101 24 of 4 0.80Down
Heart137 34 of 4 1.04None
Fat body106 14 of 4 0.80Down
Ovary217 34 of 4 1.60Up
Testis388 84 of 4 2.90Up
Male accessory glands90 84 of 4 0.70Down
Virgin spermatheca71 64 of 4 0.54Down
Mated spermatheca79 54 of 4 0.60Down
Adult carcass81 44 of 4 0.60Down
Larval CNS135 34 of 4 1.02None
Larval Salivary gland74 34 of 4 0.56Down
Larval midgut65 14 of 4 0.49Down
Larval tubule106 74 of 4 0.80Down
Larval hindgut59 14 of 4 0.45Down
Larval fat body125 224 of 4 0.90None
Larval trachea163 64 of 4 1.23Up
Larval carcass41 14 of 4 0.31Down
S2 cells (growing)192 54 of 4 1.45Up
Whole fly133 74 of 4

Looking for CG8455-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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