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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8458-RA through 18771 annotations produced 1 hits



wnt inhibitor of Dorsal (wntD):

Annotation Number : CG8458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038134
Gbrowse : chr3R:9117773-9118920 (-) // 100.0 //
Probeset : 1628236_at
Accessions : protein= NP_650272;, nucleotide= NM_142015;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
FlyMine data for FBgn0038134.
BDGP gene expression has embryonic in situ data for Wnt8: 45 pix of staining in 12 body parts.
Homophila reports that CG8458 is a close match (8e-16) to human gene INT4;WNT3 (NP_110380), a gene associated with Tetra-amelia, autosomal recessive, 273395 (3).
BioGrid reports that CG8458 interacts with CG8942 CG9572 CG1916 CG4889 .
TRiP has 1 RNAi stocks for FBgn0038134 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head0 ± 00 of 4 0.40None
Eye5 ± 20 of 4 2.08None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland6 ± 20 of 4 2.29None
Crop8 ± 30 of 4 3.10None
Midgut16 ± 10 of 4 6.40Up
Tubule5 ± 00 of 4 2.20Up
Hindgut19 ± 04 of 4 7.70Up
Heart6 ± 10 of 4 2.48None
Fat body2 ± 30 of 4 1.11None
Ovary2 ± 00 of 4 0.80None
Testis1 ± 00 of 4 0.40None
Male accessory glands3 ± 20 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.91None
Mated spermatheca5 ± 10 of 4 2.17None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS3 ± 00 of 4 1.24None
Larval Salivary gland6 ± 20 of 4 2.61None
Larval midgut25 ± 31 of 4 9.62Up
Larval tubule3 ± 10 of 4 1.50None
Larval hindgut7 ± 10 of 4 2.77None
Larval fat body4 ± 20 of 4 1.60None
Larval trachea4 ± 20 of 4 1.72None
Larval carcass4 ± 00 of 4 1.60None
S2 cells (growing)1 ± 00 of 4 0.70None
Whole fly2 ± 10 of 4

Looking for CG8458-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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