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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8462-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56e (Obp56e):

Annotation Number : CG8462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034471
Gbrowse : chr2R:15599849-15600461 (+) // 99.11 //
Probeset : 1638276_at
Accessions : protein= NP_611445;, nucleotide= NM_137601;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0034471.
BDGP gene expression has embryonic in situ data for Obp56e: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0034471 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head3533 ± 1244 of 412.40Up
Eye114 ± 274 of 4 0.40Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.00Down
Salivary gland24 ± 22 of 4 0.09Down
Crop27 ± 24 of 4 0.10Down
Midgut14 ± 13 of 4 0.10Down
Tubule6 ± 01 of 4 0.00Down
Hindgut120 ± 164 of 4 0.40Down
Heart6 ± 11 of 4 0.02Down
Fat body6 ± 22 of 4 0.02Down
Ovary5 ± 01 of 4 0.00Down
Testis5 ± 10 of 4 0.00Down
Male accessory glands2417 ± 6624 of 4 8.50Up
Virgin spermatheca5 ± 11 of 4 0.02Down
Mated spermatheca7 ± 01 of 4 0.03Down
Adult carcass45 ± 34 of 4 0.20Down
Larval CNS4 ± 00 of 4 0.01Down
Larval Salivary gland11 ± 32 of 4 0.04Down
Larval midgut9 ± 21 of 4 0.03Down
Larval tubule12 ± 23 of 4 0.00Down
Larval hindgut10 ± 22 of 4 0.04Down
Larval fat body9 ± 31 of 4 0.00Down
Larval trachea16 ± 64 of 4 0.06Down
Larval carcass23 ± 54 of 4 0.08Down
S2 cells (growing)6 ± 01 of 4 0.02Down
Whole fly285 ± 84 of 4

Looking for CG8462-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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