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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8465-RA through 18771 annotations produced 1 hits



lethal (1) G0222 (l(1)G0222):

Annotation Number : CG8465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028343
Gbrowse : chrX:17465886-17473262 (-) // 100.0 //
Probeset : 1636237_s_at
Accessions : protein= NP_573221; /// NP_728082; /// NP_728083;, nucleotide= NM_132993; /// NM_167569; /// NM_167570;
FlyMine data for FBgn0028343.
VDRC has 2 RNAi stocks for FBgn0028343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 ± 24 of 4 0.60Down
Head71 ± 24 of 4 0.30Down
Eye85 ± 84 of 4 0.40Down
Thoracicoabdominal ganglion86 ± 24 of 4 0.40Down
Salivary gland136 ± 94 of 4 0.64Down
Crop107 ± 54 of 4 0.50Down
Midgut43 ± 14 of 4 0.20Down
Tubule47 ± 34 of 4 0.20Down
Hindgut273 ± 74 of 4 1.30Up
Heart58 ± 14 of 4 0.27Down
Fat body50 ± 104 of 4 0.24Down
Ovary442 ± 74 of 4 2.10Up
Testis48 ± 14 of 4 0.20Down
Male accessory glands276 ± 124 of 4 1.30Up
Virgin spermatheca44 ± 44 of 4 0.21Down
Mated spermatheca29 ± 24 of 4 0.14Down
Adult carcass81 ± 54 of 4 0.40Down
Larval CNS246 ± 74 of 4 1.17None
Larval Salivary gland1420 ± 1434 of 4 6.71Up
Larval midgut34 ± 43 of 4 0.16Down
Larval tubule90 ± 54 of 4 0.40Down
Larval hindgut62 ± 14 of 4 0.30Down
Larval fat body197 ± 234 of 4 0.90None
Larval trachea112 ± 144 of 4 0.53Down
Larval carcass103 ± 154 of 4 0.49Down
S2 cells (growing)281 ± 74 of 4 1.33Up
Whole fly211 ± 184 of 4

Looking for CG8465-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime