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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8491-RA through 18771 annotations produced 1 hits



khotalo (kto):

Annotation Number : CG8491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001324
Gbrowse : chr3L:19829713-19838044 (+) // 100.0 //
Probeset : 1628801_at
Accessions : protein= NP_524786;, nucleotide= NM_080047;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator
FlyMine data for FBgn0001324.
Homophila reports that CG8491 is a close match (6e-90) to human gene (NP_005111), a gene associated with .
BioGrid reports that CG8491 interacts with CG6502 CG6502 CG10159 CG3938 CG32443 CG9375 CG18085 .
TRiP has 1 RNAi stocks for FBgn0001324 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001324 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 44 of 4 1.70Up
Head43 24 of 4 0.90None
Eye47 34 of 4 0.95None
Thoracicoabdominal ganglion73 54 of 4 1.50Up
Salivary gland81 90 of 4 1.64Up
Crop55 14 of 4 1.10Up
Midgut37 34 of 4 0.70Down
Tubule49 14 of 4 1.00None
Hindgut43 64 of 4 0.90None
Heart42 04 of 4 0.86Down
Fat body40 83 of 4 0.80None
Ovary71 34 of 4 1.40Up
Testis187 104 of 4 3.80Up
Male accessory glands60 34 of 4 1.20Up
Virgin spermatheca49 34 of 4 1.00None
Mated spermatheca58 24 of 4 1.17Up
Adult carcass38 22 of 4 0.80Down
Larval CNS139 164 of 4 2.81Up
Larval Salivary gland85 44 of 4 1.71Up
Larval midgut46 54 of 4 0.93None
Larval tubule64 24 of 4 1.30Up
Larval hindgut47 34 of 4 0.95None
Larval fat body65 54 of 4 1.30Up
Larval trachea95 94 of 4 1.92Up
Larval carcass60 44 of 4 1.22None
S2 cells (growing)136 84 of 4 2.75Up
Whole fly49 14 of 4

Looking for CG8491-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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