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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8494-RA through 18771 annotations produced 1 hits



(CG8494):

Annotation Number : CG8494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033916
Gbrowse : chr2R:10127441-10131167 (+) // 100.0 //
Probeset : 1626786_at
Accessions : protein= NP_610943;, nucleotide= NM_137099;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity //
FlyMine data for FBgn0033916.
BDGP gene expression has embryonic in situ data for CG8494: 4 pix of staining in 1 body parts.
Homophila reports that CG8494 is a close match (7e-11) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
VDRC has 5 RNAi stocks for FBgn0033916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 24 of 4 1.00None
Head46 ± 34 of 4 0.50Down
Eye59 ± 24 of 4 0.64Down
Thoracicoabdominal ganglion78 ± 34 of 4 0.80None
Salivary gland94 ± 44 of 4 1.02None
Crop60 ± 34 of 4 0.60Down
Midgut46 ± 04 of 4 0.50Down
Tubule62 ± 44 of 4 0.70Down
Hindgut48 ± 14 of 4 0.50Down
Heart114 ± 64 of 4 1.23None
Fat body118 ± 154 of 4 1.28None
Ovary200 ± 24 of 4 2.20Up
Testis352 ± 104 of 4 3.80Up
Male accessory glands53 ± 34 of 4 0.60Down
Virgin spermatheca40 ± 14 of 4 0.43Down
Mated spermatheca49 ± 34 of 4 0.54Down
Adult carcass86 ± 74 of 4 0.90None
Larval CNS92 ± 34 of 4 1.00None
Larval Salivary gland44 ± 14 of 4 0.48Down
Larval midgut40 ± 24 of 4 0.44Down
Larval tubule52 ± 44 of 4 0.60Down
Larval hindgut42 ± 14 of 4 0.46Down
Larval fat body42 ± 104 of 4 0.50Down
Larval trachea36 ± 34 of 4 0.40Down
Larval carcass43 ± 14 of 4 0.47Down
S2 cells (growing)75 ± 34 of 4 0.82None
Whole fly92 ± 84 of 4

Looking for CG8494-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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